MacSyFinder API documentation

• configuration
  • configuration API reference
  • MacsyDefaults
  • Config
  • NoneConfig
• model_conf_parser
  • model_conf_parser API reference
  • ModelConfParser
• registries
  • registries API reference
  • ModelRegistry
  • ModelLocation
  • MetaDefLoc
  • DefinitionLocation
  • split_def_name
  • join_def_path
  • scan_models_dir
• definition_parser
  • defintion_parser API reference
  • DefinitionParser
• model
  • model API reference
  • ModelBank
  • Model
• gene
  • gene API reference
  • GeneBank
  • Gene
  • CoreGene
  • ModelGene
  • Exchangeable
  • GeneStatus
• profile
  • profile API reference
  • ProfileFactory
  • Profile
• hit
  • hit API reference
  • CoreHit
  • ModelHit
  • AbstractCounterpartHit
  • Loner
  • MultiSystem
  • LonerMultiSystem
  • HitWeight
  • get_best_hit_4_func
  • sort_model_hits
  • compute_best_MSHit
  • get_best_hits
• cluster
  • cluster API reference
  • cluster
  • build_clusters
• system
  • system reference api
  • MatchMaker
  • OrderedMatchMaker
  • UnorderedMatchMaker
  • HitSystemTracker
  • MetaSetOfHits
  • AbstractSetOfHits
  • AbstractClusterizedHits
  • System
  • RejectedClusters
  • AbstractUnordered
  • LikelySystem
  • UnlikelySystem
• report
  • report API reference
  • HMMReport
  • GeneralHMMReport
  • OrderedHMMReport
  • GembaseHMMReport
• search_genes
  • search_genes API reference
  • search_genes
• solution
  • solution API reference
  • Solution
  • combine_clusters
  • combine_multisystems
  • find_best_solutions
• serialization
  • SystemSerializer
  • TsvSystemSerializer
  • TsvSolutionSerializer
  • TsvLikelySystemSerializer
  • TsvSpecialHitSerializer
  • TxtSystemSerializer
  • TxtLikelySystemSerializer
  • TxtUnikelySystemSerializer
• database
  • database API reference
  • Indexes
  • RepliconInfo
  • RepliconDB
  • fasta_iter
• errors
  • error API reference
  • error
• utils
  • utils API reference
  • get_def_to_detect
  • get_replicon_names
  • threads_available
• package
  • package API reference
  • AbstractModelIndex
  • LocalModelIndex
  • RemoteModelIndex
  • Package
• scripts
  • API reference
  • macsyfinder
  • macsydata
  • macsyconfig
  • macsyprofile